fix(graph): 改进图数据库查询逻辑和错误处理
修复图数据库查询时的错误处理,添加完整的traceback信息 重构查询逻辑,分离向量查询和模糊查询方法 更新README文档说明知识图谱的限制和使用方法 确保查询只针对带有Entity标签的节点 添加数据库状态检查断言
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@ -153,19 +153,23 @@ custom-provider-name-here:
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### 知识图谱
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在 v0.2 版本中,项目支持了基于 [LightRAG](https://github.com/HKUDS/LightRAG) 的知识图谱构建方法。需要在知识库中创建一个基于 LightRAG 的知识库,然后上传文档。构建的知识图谱会自动导入到 Neo4j 中,并使用不同的 label 做区分。
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在 v0.2 版本中,项目支持了基于 [LightRAG](https://github.com/HKUDS/LightRAG) 的知识图谱构建方法。需要在知识库中创建一个基于 LightRAG 的知识库,然后上传文档。构建的知识图谱会自动导入到 Neo4j 中,并使用不同的 label 做区分。需要说明的是,基于 LightRAG 的知识库,可以在知识库详情中可视化,但是不能在侧边栏的图谱中检索,知识图谱检索工具也不支持基于 LightRAG 的知识库进行检索。基于 LightRAG 方法构建的图谱的查询,需要使用对应的知识库作为查询工具。
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|知识库可视化|Neo4J管理端|
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|--|--|
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除此之外,也支持将已有的知识图谱按照下面的格式导入 Neo4j 中,或者通过修改 `docker-compose.yml` 中的 `NEO4J_URI` 配置来接入已有的 Neo4j 实例。默认账户密码是`neo4j` / `0123456789`。
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除此之外,也支持将已有的知识图谱按照下面的格式导入 Neo4j 中,上传后,节点会自动添加 `Upload`、`Entity` 标签,关系会自动添加 `Relation` 标签。可以通过 `name` 属性访问实体的名称,使用 `type` 属性访问边的名称。默认账户密码是`neo4j` / `0123456789`。
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**数据格式**:支持 JSONL 格式导入
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```jsonl
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{"h": "北京", "t": "中国", "r": "首都"}
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{"h": "上海", "t": "中国", "r": "直辖市"}
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```
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此外,也可以通过修改 `docker-compose.yml` 中的 `NEO4J_URI` 配置来接入已有的 Neo4j 实例,但是最好确保每个节点都有 Entity 标签,否则会影响到图的检索与构建。
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## 🔧 高级配置
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### OCR 服务(可选)
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@ -223,7 +223,7 @@ async def get_neo4j_node(
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}
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except Exception as e:
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logger.error(f"查询图节点失败: {e}")
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logger.error(f"查询图节点失败: {e}\n{traceback.format_exc()}")
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raise HTTPException(status_code=500, detail=f"查询图节点失败: {str(e)}")
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# =============================================================================
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@ -53,14 +53,15 @@ class GraphDatabase:
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def is_running(self):
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"""检查图数据库是否正在运行"""
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return self.status == "open"
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return self.status == "open" or self.status == "processing"
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def get_sample_nodes(self, kgdb_name='neo4j', num=50):
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"""获取指定数据库的 num 个节点信息"""
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assert self.driver is not None, "Database is not connected"
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self.use_database(kgdb_name)
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def query(tx, num):
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result = tx.run("MATCH (n)-[r]->(m) RETURN n, r, m LIMIT $num", num=int(num))
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"""Note: 这里只查询带有 Entity 标签的节点"""
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result = tx.run("MATCH (n:Entity)-[r]->(m:Entity) RETURN n, r, m LIMIT $num", num=int(num))
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return result.values()
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with self.driver.session() as session:
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@ -97,8 +98,8 @@ class GraphDatabase:
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t = triple['t']
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r = triple['r']
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query = (
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"MERGE (a:Entity {name: $h}) "
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"MERGE (b:Entity {name: $t}) "
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"MERGE (a:Entity:Upload {name: $h}) "
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"MERGE (b:Entity:Upload {name: $t}) "
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"MERGE (a)-[:" + r.replace(" ", "_") + "]->(b)"
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)
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tx.run(query, h=h, t=t)
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@ -122,8 +123,8 @@ class GraphDatabase:
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"""添加一个三元组"""
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for entry in data:
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tx.run("""
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MERGE (h:Entity {name: $h})
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MERGE (t:Entity {name: $t})
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MERGE (h:Entity:Upload {name: $h})
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MERGE (t:Entity:Upload {name: $t})
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MERGE (h)-[r:RELATION {type: $r}]->(t)
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""", h=entry['h'], t=entry['t'], r=entry['r'])
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@ -167,10 +168,11 @@ class GraphDatabase:
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""", name=entity_name, embedding=embedding)
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# 判断模型名称是否匹配
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cur_embed_info = config.embed_model_names[config.embed_model]
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self.embed_model_name = self.embed_model_name or cur_embed_info.get('name')
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assert self.embed_model_name == cur_embed_info.get('name') or self.embed_model_name is None, \
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f"embed_model_name={self.embed_model_name}, {cur_embed_info.get('name')=}"
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self.embed_model_name = self.embed_model_name or config.embed_model
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cur_embed_info = config.embed_model_names.get(self.embed_model_name)
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logger.warning(f"embed_model_name={self.embed_model_name}, {cur_embed_info=}")
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assert self.embed_model_name == config.embed_model or self.embed_model_name is None, \
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f"embed_model_name={self.embed_model_name}, {config.embed_model=}"
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with self.driver.session() as session:
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logger.info(f"Adding entity to {kgdb_name}")
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@ -267,12 +269,48 @@ class GraphDatabase:
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def query_node(self, entity_name, threshold=0.9, kgdb_name='neo4j', hops=2, max_entities=5, **kwargs):
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"""知识图谱查询节点的入口:"""
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assert self.driver is not None, "Database is not connected"
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# TODO 添加判断节点数量为 0 停止检索
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# 判断是否启动
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if not self.is_running():
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raise Exception("图数据库未启动")
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assert self.is_running(), "图数据库未启动"
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self.use_database(kgdb_name)
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# 使用向量索引进行查询
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results_sim = self._query_with_vector_sim(entity_name, kgdb_name, hops, threshold)
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results_fuzzy = self._query_with_fuzzy_match(entity_name, kgdb_name, hops)
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results = results_sim + results_fuzzy
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qualified_entities = [result[0] for result in results][:max_entities]
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logger.debug(f"Graph Query Entities: {entity_name}, {qualified_entities=}")
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# 对每个合格的实体进行查询
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all_query_results = []
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for entity in qualified_entities:
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query_result = self._query_specific_entity(entity_name=entity, hops=hops, kgdb_name=kgdb_name)
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all_query_results.extend(query_result)
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return all_query_results
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def _query_with_fuzzy_match(self, keyword, kgdb_name='neo4j', hops = 2):
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"""模糊查询"""
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assert self.driver is not None, "Database is not connected"
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self.use_database(kgdb_name)
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def query_fuzzy_match(tx, keyword, hops):
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result = tx.run("""
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MATCH (n:Entity)
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WHERE n.name CONTAINS $keyword
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RETURN DISTINCT n.name AS name
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""", keyword=keyword)
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values = result.values()
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logger.debug(f"Fuzzy Query Results: {values}")
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return values
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with self.driver.session() as session:
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return session.execute_read(query_fuzzy_match, keyword, hops)
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def _query_with_vector_sim(self, keyword, kgdb_name='neo4j', hops = 2, threshold=0.9):
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"""向量查询"""
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assert self.driver is not None, "Database is not connected"
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self.use_database(kgdb_name)
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def _index_exists(tx, index_name):
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"""检查索引是否存在"""
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result = tx.run("SHOW INDEXES")
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@ -281,7 +319,7 @@ class GraphDatabase:
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return True
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return False
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def query(tx, text):
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def query_by_vector(tx, text, threshold):
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# 首先检查索引是否存在
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if not _index_exists(tx, "entityEmbeddings"):
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raise Exception("向量索引不存在,请先创建索引")
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@ -292,30 +330,15 @@ class GraphDatabase:
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YIELD node AS similarEntity, score
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RETURN similarEntity.name AS name, score
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""", embedding=embedding)
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return result.values()
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return [r for r in result if r["score"] > threshold]
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try:
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with self.driver.session() as session:
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results = session.execute_read(query, entity_name)
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except Exception as e:
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if "向量索引不存在" in str(e):
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logger.error(f"向量索引不存在,请先创建索引: {e}, {traceback.format_exc()}")
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return []
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raise e
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with self.driver.session() as session:
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results = session.execute_read(query_by_vector, keyword, threshold=threshold)
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results = clean_triples_embedding(results)
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return results
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# 筛选出分数高于阈值的实体
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qualified_entities = [result[0] for result in results[:max_entities] if result[1] > threshold]
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logger.debug(f"Graph Query Entities: {entity_name}, {qualified_entities=}")
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# 对每个合格的实体进行查询
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all_query_results = []
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for entity in qualified_entities:
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query_result = self.query_specific_entity(entity_name=entity, hops=hops, kgdb_name=kgdb_name)
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all_query_results.extend(query_result)
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return all_query_results
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def query_specific_entity(self, entity_name, kgdb_name='neo4j', hops=2, limit=100):
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def _query_specific_entity(self, entity_name, kgdb_name='neo4j', hops=2, limit=100):
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"""查询指定实体三元组信息(无向关系)"""
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assert self.driver is not None, "Database is not connected"
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if not entity_name:
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@ -355,6 +378,7 @@ class GraphDatabase:
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def query_all_nodes_and_relationships(self, kgdb_name='neo4j', hops = 2):
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"""查询图数据库中所有三元组信息 NEVER USE"""
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raise Exception("NEVER USE")
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assert self.driver is not None, "Database is not connected"
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self.use_database(kgdb_name)
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def query(tx, hops):
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@ -371,6 +395,7 @@ class GraphDatabase:
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def query_by_relationship_type(self, relationship_type, kgdb_name='neo4j', hops = 2):
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"""查询指定关系三元组信息 NEVER USE"""
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raise Exception("NEVER USE")
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assert self.driver is not None, "Database is not connected"
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self.use_database(kgdb_name)
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def query(tx, relationship_type, hops):
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@ -385,26 +410,9 @@ class GraphDatabase:
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with self.driver.session() as session:
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return session.execute_read(query, relationship_type, hops)
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def query_entity_like(self, keyword, kgdb_name='neo4j', hops = 2):
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"""模糊查询 NEVER USE"""
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assert self.driver is not None, "Database is not connected"
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self.use_database(kgdb_name)
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def query(tx, keyword, hops):
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result = tx.run(f"""
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MATCH (n:Entity)
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WHERE n.name CONTAINS $keyword
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MATCH (n)-[r*1..{hops}]->(m)
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RETURN n AS n, r, m AS m
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""", keyword=keyword)
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values = result.values()
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values = clean_triples_embedding(values)
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return values
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with self.driver.session() as session:
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return session.execute_read(query, keyword, hops)
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def query_node_info(self, node_name, kgdb_name='neo4j', hops = 2):
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"""查询指定节点的详细信息返回信息 NEVER USE"""
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raise Exception("NEVER USE")
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assert self.driver is not None, "Database is not connected"
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self.use_database(kgdb_name) # 切换到指定数据库
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def query(tx, node_name, hops):
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@ -465,7 +473,7 @@ class GraphDatabase:
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}
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try:
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if self.status == "open" and self.driver and self.is_running():
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if self.is_running():
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# 获取数据库信息
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with self.driver.session() as session:
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graph_info = session.execute_read(query)
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@ -474,6 +482,9 @@ class GraphDatabase:
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from datetime import datetime
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graph_info["last_updated"] = datetime.now().isoformat()
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return graph_info
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else:
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logger.warning(f"图数据库未连接或未运行:{self.status=}")
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return None
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except Exception as e:
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logger.error(f"获取图数据库信息失败:{e}, {traceback.format_exc()}")
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